American Society of Plant Biologists
Professional society devoted to the advancement of the plant sciences
Ammonium Sulfate Calculator
Computes the amount of solid ammonium sulfate required to reach a given percent saturation
ApE
Free plasmid editor software download
Arabidopsis Information Resource
Database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana
BioMath Calculators
Useful unit converstions
BLAST: Basic Local Alignment Search Tool
Protein and nucleotide sequence database alignment tool
Centrifugation Rotor Calculator
Interconverts RPM and RCF for common rotors
Cold Springs Harbor Protocols
Journal of laboratory protocols
Cyflogic
Free cytometry data analysis software
DNA/RNA/Protein Molecular Weight Calculator
E. coli Statistics
Useful information on E. coli
ExPASy
Comprehensive proteomics toolbox
Finnzymes Tm Calculator
DNA melting temp calculator for Phusion PCR(nearest-neighbor method)
Gibson Calculator
Primer design for Gibson ligations (KT)
Hill Coefficient Calculator
Calculates Hill coefficient from tab-delineated data
Integrated Microbial Genomes
Comparatively analyze genome data by gene, genome and function
LALIGN
Basic sequence alignment tool
Microbes On-line
Genome analysis tools
Mobyl@pasteur
Sequence Alignment and Analysis (ClustalW)
Oligocalc
RNA and DNA oligo properties
Online Analysis Tools
Various useful bioinformatics resources
Plasmid Databases
Links to various plasmid sequence resources
Protein Calculator
Protein Properties
ProTISA
Database of confirmed prokaryotic translation initiation sites
Random DNA Generator
Generates a random DNA sequence with defined GC content
RBS Generator
Source code
Restriction Mapper
Finds restriction sites in a DNA sequence
SignalP
Signal peptide cleavage site predictor
Reverse Complement
Converts a DNA sequence into its reverse, complement, or reverse-complement counterpart
UNAfold
RNA and DNA folding algorithms
Thank you to the Voigt lab for beginning this compilation!